#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03575/HG03575.cram --algo AlignmentStat 1000G/HG03575/QCmetrics/HG03575.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382663139	382663139	1.000000	0	382566031	0.999746	56883938326	360983121	53874179450	53140626972	0.000000	0.003833	0.003267	0.000258	150.000000	381248395	0.996556	0	0.500515	0.007647	0.000001	
SECOND_OF_PAIR	382663139	382663139	1.000000	0	381292508	0.996418	56241558071	357365689	53103564457	52043164765	0.000000	0.004890	0.004232	0.000261	150.000000	381248395	0.999884	0	0.501089	0.008197	0.000000	
PAIR	765326278	765326278	1.000000	0	763858539	0.998082	113125496397	718348810	106977743907	105183791737	0.000000	0.004359	0.003746	0.000259	150.000000	762496790	0.998217	0	0.500801	0.007922	0.000000