#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03583/HG03583.cram --algo AlignmentStat 1000G/HG03583/QCmetrics/HG03583.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	371245343	371245343	1.000000	0	371150133	0.999744	55155693273	350154119	52210505348	51367574440	0.000000	0.003944	0.003399	0.000255	150.000000	370134667	0.997264	0	0.500545	0.007272	0.000000	
SECOND_OF_PAIR	371245343	371245343	1.000000	0	370191890	0.997162	54783448956	346609217	51659783027	50666896416	0.000000	0.004400	0.003743	0.000262	150.000000	370134667	0.999845	0	0.501517	0.007478	0.000000	
PAIR	742490686	742490686	1.000000	0	741342023	0.998453	109939142229	696763336	103870288375	102034470856	0.000000	0.004171	0.003570	0.000258	150.000000	740269334	0.998553	0	0.501030	0.007375	0.000000