#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03589/HG03589.cram --algo AlignmentStat 1000G/HG03589/QCmetrics/HG03589.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	367420092	367420092	1.000000	0	367304133	0.999684	54553795705	346115908	51600037839	50603973319	0.000000	0.004513	0.003930	0.000236	150.000000	366273593	0.997194	0	0.500608	0.006926	0.000000	
SECOND_OF_PAIR	367420092	367420092	1.000000	0	366335292	0.997048	54182826738	342702066	51059133128	49951528349	0.000000	0.004908	0.004222	0.000244	150.000000	366273593	0.999832	0	0.501335	0.007104	0.000000	
PAIR	734840184	734840184	1.000000	0	733639425	0.998366	108736622443	688817974	102659170967	100555501668	0.000000	0.004710	0.004075	0.000240	150.000000	732547186	0.998511	0	0.500971	0.007015	0.000000