#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03593/HG03593.cram --algo AlignmentStat 1000G/HG03593/QCmetrics/HG03593.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	364847191	364847191	1.000000	0	364739521	0.999705	54224457344	342546832	51113202009	50421957440	0.000000	0.003674	0.003043	0.000228	150.000000	363897589	0.997692	0	0.500647	0.007201	0.000000	
SECOND_OF_PAIR	364847191	364847191	1.000000	0	363947276	0.997533	53841439428	339792448	50619702599	49759482144	0.000000	0.004212	0.003494	0.000232	150.000000	363897589	0.999863	0	0.500549	0.007449	0.000000	
PAIR	729694382	729694382	1.000000	0	728686797	0.998619	108065896772	682339280	101732904608	100181439584	0.000000	0.003942	0.003267	0.000230	150.000000	727795178	0.998776	0	0.500598	0.007325	0.000000