#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03594/HG03594.cram --algo AlignmentStat 1000G/HG03594/QCmetrics/HG03594.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	355045226	355045226	1.000000	0	354897260	0.999583	52667977867	333482099	49680477391	48342196869	0.000000	0.005446	0.004799	0.000223	150.000000	353783018	0.996860	0	0.500492	0.006973	0.000000	
SECOND_OF_PAIR	355045226	355045226	1.000000	0	353858721	0.996658	52283321335	330153623	49146229096	47701565362	0.000000	0.005862	0.005118	0.000230	150.000000	353783018	0.999786	0	0.501202	0.007188	0.000000	
PAIR	710090452	710090452	1.000000	0	708755981	0.998121	104951299202	663635722	98826706487	96043762231	0.000000	0.005653	0.004958	0.000227	150.000000	707566036	0.998321	0	0.500846	0.007080	0.000000