#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03616/HG03616.cram --algo AlignmentStat 1000G/HG03616/QCmetrics/HG03616.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	378581213	378581213	1.000000	0	378444295	0.999638	56218389580	356578719	53169220001	52408492821	0.000000	0.003698	0.003125	0.000233	150.000000	377564353	0.997675	0	0.500517	0.006960	0.000000	
SECOND_OF_PAIR	378581213	378581213	1.000000	0	377631722	0.997492	55871151731	353357126	52656544918	51762202031	0.000000	0.004073	0.003396	0.000240	150.000000	377564353	0.999822	0	0.501334	0.007191	0.000000	
PAIR	757162426	757162426	1.000000	0	756076017	0.998565	112089541311	709935845	105825764919	104170694852	0.000000	0.003885	0.003260	0.000236	150.000000	755128706	0.998747	0	0.500925	0.007076	0.000000