#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03619/HG03619.cram --algo AlignmentStat 1000G/HG03619/QCmetrics/HG03619.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	356648382	356648382	1.000000	0	356503910	0.999595	52915068844	335738868	50018996873	48646911082	0.000000	0.005419	0.004857	0.000222	150.000000	355426801	0.996979	0	0.500649	0.006932	0.000000	
SECOND_OF_PAIR	356648382	356648382	1.000000	0	355500157	0.996781	52554408440	332868911	49546585636	47972916780	0.000000	0.006052	0.005408	0.000228	150.000000	355426801	0.999794	0	0.500803	0.007142	0.000000	
PAIR	713296764	713296764	1.000000	0	712004067	0.998188	105469477284	668607779	99565582509	96619827862	0.000000	0.005734	0.005131	0.000225	150.000000	710853602	0.998384	0	0.500726	0.007037	0.000000