#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03631/HG03631.cram --algo AlignmentStat 1000G/HG03631/QCmetrics/HG03631.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	358631110	358631110	1.000000	0	358488603	0.999603	53236926382	338634665	50467168507	49130369719	0.000000	0.005195	0.004650	0.000220	150.000000	357463778	0.997141	0	0.500480	0.006392	0.000000	
SECOND_OF_PAIR	358631110	358631110	1.000000	0	357537150	0.996950	52887504750	335667605	49991825407	48588921197	0.000000	0.005481	0.004853	0.000226	150.000000	357463778	0.999795	0	0.500985	0.006579	0.000000	
PAIR	717262220	717262220	1.000000	0	716025753	0.998276	106124431132	674302270	100458993914	97719290916	0.000000	0.005338	0.004751	0.000223	150.000000	714927556	0.998466	0	0.500732	0.006485	0.000000