#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03644/HG03644.cram --algo AlignmentStat 1000G/HG03644/QCmetrics/HG03644.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	340181560	340181560	1.000000	0	340045363	0.999600	50482740599	320021021	47672180675	46324789149	0.000000	0.005558	0.004965	0.000222	150.000000	339159229	0.997394	0	0.500560	0.006844	0.000000	
SECOND_OF_PAIR	340181560	340181560	1.000000	0	339231324	0.997207	50208877768	317672641	47301650323	45867108230	0.000000	0.005890	0.005226	0.000227	150.000000	339159229	0.999787	0	0.500616	0.007027	0.000000	
PAIR	680363120	680363120	1.000000	0	679276687	0.998403	100691618367	637693662	94973830998	92191897379	0.000000	0.005723	0.005095	0.000224	150.000000	678318458	0.998589	0	0.500588	0.006935	0.000000