#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03645/HG03645.cram --algo AlignmentStat 1000G/HG03645/QCmetrics/HG03645.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	360000765	360000765	1.000000	0	359798349	0.999438	53440120198	339621061	50617410711	49396508026	0.000000	0.005053	0.004508	0.000222	150.000000	358604223	0.996681	0	0.500654	0.006527	0.000000	
SECOND_OF_PAIR	360000765	360000765	1.000000	0	358682238	0.996337	53017380472	336368373	50064396770	48506916369	0.000000	0.006054	0.005414	0.000227	150.000000	358604223	0.999782	0	0.501040	0.006703	0.000000	
PAIR	720001530	720001530	1.000000	0	718480587	0.997888	106457500670	675989434	100681807481	97903424395	0.000000	0.005552	0.004959	0.000225	150.000000	717208446	0.998229	0	0.500847	0.006615	0.000000