#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03652/HG03652.cram --algo AlignmentStat 1000G/HG03652/QCmetrics/HG03652.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	403772684	403772684	1.000000	0	403682398	0.999776	60008765487	378998543	56564380188	55857684285	0.000000	0.003665	0.002992	0.000237	150.000000	402585123	0.997282	0	0.500544	0.007529	0.000000	
SECOND_OF_PAIR	403772684	403772684	1.000000	0	402628423	0.997166	59424067513	375878799	55882025534	54980113655	0.000000	0.004304	0.003561	0.000239	150.000000	402585123	0.999892	0	0.500388	0.008105	0.000000	
PAIR	807545368	807545368	1.000000	0	806310821	0.998471	119432833000	754877342	112446405722	110837797940	0.000000	0.003983	0.003275	0.000238	150.000000	805170246	0.998585	0	0.500466	0.007817	0.000000