#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03663/HG03663.cram --algo AlignmentStat 1000G/HG03663/QCmetrics/HG03663.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	375585694	375585694	1.000000	0	375494855	0.999758	55750821942	351428507	52388247743	51593944215	0.000000	0.004018	0.003299	0.000237	150.000000	374684288	0.997841	0	0.500394	0.007570	0.000000	
SECOND_OF_PAIR	375585694	375585694	1.000000	0	374742660	0.997755	55451099231	348310922	51925204585	51137012168	0.000000	0.004077	0.003262	0.000244	150.000000	374684288	0.999844	0	0.501040	0.007767	0.000000	
PAIR	751171388	751171388	1.000000	0	750237515	0.998757	111201921173	699739429	104313452328	102730956383	0.000000	0.004047	0.003280	0.000240	150.000000	749368576	0.998842	0	0.500717	0.007669	0.000000