#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03672/HG03672.cram --algo AlignmentStat 1000G/HG03672/QCmetrics/HG03672.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	602194694	602194694	1.000000	0	601917723	0.999540	89468508308	565451013	84352183495	83010467105	0.000000	0.004071	0.003445	0.000234	150.000000	600323328	0.997351	0	0.500507	0.007645	0.000000	
SECOND_OF_PAIR	602194694	602194694	1.000000	0	600423472	0.997059	88810627079	559736064	83415266070	81805888238	0.000000	0.004510	0.003785	0.000241	150.000000	600323328	0.999833	0	0.501141	0.007875	0.000000	
PAIR	1204389388	1204389388	1.000000	0	1202341195	0.998299	178279135387	1125187077	167767449565	164816355343	0.000000	0.004290	0.003614	0.000238	150.000000	1200646656	0.998591	0	0.500823	0.007760	0.000000