#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03687/HG03687.cram --algo AlignmentStat 1000G/HG03687/QCmetrics/HG03687.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	330169478	330169478	1.000000	0	330110280	0.999821	49079710833	309701820	46217738137	45555719719	0.000000	0.003730	0.003079	0.000246	150.000000	329223500	0.997314	0	0.500644	0.006744	0.000000	
SECOND_OF_PAIR	330169478	330169478	1.000000	0	329258751	0.997242	48679344083	307163204	45720450629	44965202803	0.000000	0.004126	0.003403	0.000249	150.000000	329223500	0.999893	0	0.500611	0.007009	0.000000	
PAIR	660338956	660338956	1.000000	0	659369031	0.998531	97759054916	616865024	91938188766	90520922522	0.000000	0.003927	0.003240	0.000247	150.000000	658447000	0.998602	0	0.500628	0.006876	0.000000