#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03689/HG03689.cram --algo AlignmentStat 1000G/HG03689/QCmetrics/HG03689.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	419415577	419415577	1.000000	0	419289905	0.999700	62358308009	395546427	58998829929	57957750151	0.000000	0.004136	0.003626	0.000220	150.000000	418120257	0.997210	0	0.500578	0.006613	0.000000	
SECOND_OF_PAIR	419415577	419415577	1.000000	0	418186761	0.997070	61894619471	391251617	58310102819	57153884845	0.000000	0.004519	0.003897	0.000228	150.000000	418120257	0.999841	0	0.501451	0.006873	0.000000	
PAIR	838831154	838831154	1.000000	0	837476666	0.998385	124252927480	786798044	117308932748	115111634996	0.000000	0.004327	0.003761	0.000224	150.000000	836240514	0.998524	0	0.501014	0.006743	0.000000