#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03692/HG03692.cram --algo AlignmentStat 1000G/HG03692/QCmetrics/HG03692.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	377267523	377267523	1.000000	0	377179165	0.999766	56039222973	355600010	53026882251	52257258520	0.000000	0.003746	0.003166	0.000231	150.000000	376360783	0.997830	0	0.500447	0.007296	0.000000	
SECOND_OF_PAIR	377267523	377267523	1.000000	0	376421621	0.997758	55712423549	352536805	52540771247	51682904381	0.000000	0.004035	0.003358	0.000237	150.000000	376360783	0.999838	0	0.501260	0.007537	0.000000	
PAIR	754535046	754535046	1.000000	0	753600786	0.998762	111751646522	708136815	105567653498	103940162901	0.000000	0.003890	0.003261	0.000234	150.000000	752721566	0.998833	0	0.500853	0.007416	0.000000