#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03693/HG03693.cram --algo AlignmentStat 1000G/HG03693/QCmetrics/HG03693.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	382509644	382509644	1.000000	0	382395827	0.999702	56802370949	358021980	53385974263	52449000698	0.000000	0.004470	0.003776	0.000244	150.000000	381448649	0.997523	0	0.500639	0.007889	0.000000	
SECOND_OF_PAIR	382509644	382509644	1.000000	0	381511122	0.997390	56435377148	354668980	52853965188	51862203113	0.000000	0.004689	0.003907	0.000251	150.000000	381448649	0.999836	0	0.500876	0.008119	0.000000	
PAIR	765019288	765019288	1.000000	0	763906949	0.998546	113237748097	712690960	106239939451	104311203811	0.000000	0.004579	0.003841	0.000247	150.000000	762897298	0.998678	0	0.500757	0.008004	0.000000