#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03694/HG03694.cram --algo AlignmentStat 1000G/HG03694/QCmetrics/HG03694.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	358131851	358131851	1.000000	0	358059446	0.999798	53236261047	336692773	50240687146	49645464420	0.000000	0.003426	0.002796	0.000240	150.000000	357223267	0.997665	0	0.500460	0.007783	0.000000	
SECOND_OF_PAIR	358131851	358131851	1.000000	0	357263711	0.997576	52862049802	333669496	49724447365	48869639851	0.000000	0.004160	0.003438	0.000244	150.000000	357223267	0.999887	0	0.501063	0.008046	0.000000	
PAIR	716263702	716263702	1.000000	0	715323157	0.998687	106098310849	670362269	99965134511	98515104271	0.000000	0.003792	0.003115	0.000242	150.000000	714446534	0.998775	0	0.500761	0.007914	0.000000