#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03706/HG03706.cram --algo AlignmentStat 1000G/HG03706/QCmetrics/HG03706.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	367307777	367307777	1.000000	0	367168565	0.999621	54528387692	346755006	51682193050	50377472452	0.000000	0.005026	0.004486	0.000223	150.000000	366035914	0.996915	0	0.500558	0.006570	0.000000	
SECOND_OF_PAIR	367307777	367307777	1.000000	0	366105959	0.996728	54122214213	343399050	51134290246	49635570199	0.000000	0.005621	0.004988	0.000229	150.000000	366035914	0.999809	0	0.501057	0.006754	0.000000	
PAIR	734615554	734615554	1.000000	0	733274524	0.998175	108650601905	690154056	102816483296	100013042651	0.000000	0.005322	0.004736	0.000226	150.000000	732071828	0.998360	0	0.500807	0.006662	0.000000