#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03708/HG03708.cram --algo AlignmentStat 1000G/HG03708/QCmetrics/HG03708.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	460034189	460034189	1.000000	0	459926326	0.999766	68325248316	432093519	64441660151	63481369007	0.000000	0.003868	0.003230	0.000238	150.000000	458878382	0.997721	0	0.500558	0.007104	0.000000	
SECOND_OF_PAIR	460034189	460034189	1.000000	0	458941570	0.997625	67915538879	428604494	63863880012	62583169399	0.000000	0.004577	0.003848	0.000243	150.000000	458878382	0.999862	0	0.501068	0.007335	0.000000	
PAIR	920068378	920068378	1.000000	0	918867896	0.998695	136240787195	860698013	128305540163	126064538406	0.000000	0.004222	0.003538	0.000241	150.000000	917756764	0.998791	0	0.500813	0.007219	0.000000