#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03755/HG03755.cram --algo AlignmentStat 1000G/HG03755/QCmetrics/HG03755.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	331239518	331239518	1.000000	0	331126362	0.999658	49220480445	310638944	46343526149	45489419453	0.000000	0.004525	0.003872	0.000237	150.000000	330120959	0.996964	0	0.500582	0.006791	0.000000	
SECOND_OF_PAIR	331239518	331239518	1.000000	0	330167285	0.996763	48765819606	307671904	45765866774	44659160666	0.000000	0.005440	0.004692	0.000243	150.000000	330120959	0.999860	0	0.501082	0.007227	0.000000	
PAIR	662479036	662479036	1.000000	0	661293647	0.998211	97986300051	618310848	92109392923	90148580119	0.000000	0.004981	0.004279	0.000240	150.000000	660241918	0.998410	0	0.500832	0.007009	0.000000