#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03775/HG03775.cram --algo AlignmentStat 1000G/HG03775/QCmetrics/HG03775.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	372965142	372965142	1.000000	0	372874093	0.999756	55364043286	350575043	52261739695	51431874094	0.000000	0.004019	0.003315	0.000239	150.000000	372062649	0.997824	0	0.500526	0.007641	0.000000	
SECOND_OF_PAIR	372965142	372965142	1.000000	0	372119534	0.997733	55069365649	347731327	51826859340	50916997447	0.000000	0.004275	0.003482	0.000246	150.000000	372062649	0.999847	0	0.500961	0.007863	0.000000	
PAIR	745930284	745930284	1.000000	0	744993627	0.998744	110433408935	698306370	104088599035	102348871541	0.000000	0.004147	0.003398	0.000242	150.000000	744125298	0.998834	0	0.500743	0.007752	0.000000