#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03777/HG03777.cram --algo AlignmentStat 1000G/HG03777/QCmetrics/HG03777.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	373137870	373137870	1.000000	0	373048553	0.999761	55378829297	350043107	52180603915	51345809156	0.000000	0.004049	0.003353	0.000242	150.000000	372300329	0.997994	0	0.500507	0.007162	0.000000	
SECOND_OF_PAIR	373137870	373137870	1.000000	0	372356767	0.997907	55115115925	347501189	51796854017	50925696830	0.000000	0.004199	0.003425	0.000248	150.000000	372300329	0.999848	0	0.500774	0.007311	0.000000	
PAIR	746275740	746275740	1.000000	0	745405320	0.998834	110493945222	697544296	103977457932	102271505986	0.000000	0.004124	0.003389	0.000245	150.000000	744600658	0.998921	0	0.500640	0.007236	0.000000