#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03785/HG03785.cram --algo AlignmentStat 1000G/HG03785/QCmetrics/HG03785.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	355632355	355632355	1.000000	0	355546041	0.999757	52777351046	333140132	49658517402	48895253286	0.000000	0.004019	0.003312	0.000239	150.000000	354725867	0.997693	0	0.500545	0.007878	0.000000	
SECOND_OF_PAIR	355632355	355632355	1.000000	0	354785842	0.997620	52458839073	330183318	49190786592	48325499413	0.000000	0.004354	0.003544	0.000245	150.000000	354725867	0.999831	0	0.501249	0.008115	0.000000	
PAIR	711264710	711264710	1.000000	0	710331883	0.998688	105236190119	663323450	98849303994	97220752699	0.000000	0.004186	0.003427	0.000242	150.000000	709451734	0.998761	0	0.500897	0.007996	0.000000