#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03802/HG03802.cram --algo AlignmentStat 1000G/HG03802/QCmetrics/HG03802.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	392495856	392495856	1.000000	0	392402433	0.999762	58312800253	369532119	55112198824	54269658000	0.000000	0.003864	0.003305	0.000234	150.000000	391462158	0.997604	0	0.500612	0.006568	0.000000	
SECOND_OF_PAIR	392495856	392495856	1.000000	0	391517709	0.997508	57950529382	366263239	54590546938	53585260791	0.000000	0.004333	0.003682	0.000241	150.000000	391462158	0.999858	0	0.501025	0.006739	0.000000	
PAIR	784991712	784991712	1.000000	0	783920142	0.998635	116263329635	735795358	109702745762	107854918791	0.000000	0.004098	0.003493	0.000238	150.000000	782924316	0.998730	0	0.500818	0.006653	0.000000