#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03885/HG03885.cram --algo AlignmentStat 1000G/HG03885/QCmetrics/HG03885.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	380476429	380476429	1.000000	0	380333829	0.999625	56359013127	354583027	52815565418	51910246263	0.000000	0.004494	0.003690	0.000246	150.000000	373500151	0.982032	0	0.500481	0.021307	0.000000	
SECOND_OF_PAIR	380476429	380476429	1.000000	0	373597604	0.981920	53764172492	333219613	49494623277	48547641212	0.000000	0.005248	0.004104	0.000293	150.000000	373500151	0.999739	0	0.504144	0.022264	0.000000	
PAIR	760952858	760952858	1.000000	0	753931433	0.990773	110123185619	687802640	102310188695	100457887475	0.000000	0.004862	0.003890	0.000269	150.000000	747000302	0.990807	0	0.502296	0.021781	0.000000