#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03949/HG03949.cram --algo AlignmentStat 1000G/HG03949/QCmetrics/HG03949.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	384451081	384451081	1.000000	0	384365205	0.999777	57130142448	362151667	54015068147	53211771258	0.000000	0.003796	0.003217	0.000233	150.000000	383436813	0.997585	0	0.500689	0.007242	0.000000	
SECOND_OF_PAIR	384451081	384451081	1.000000	0	383487613	0.997494	56762310508	358949918	53488140593	52454289001	0.000000	0.004477	0.003802	0.000240	150.000000	383436813	0.999868	0	0.501143	0.007538	0.000000	
PAIR	768902162	768902162	1.000000	0	767852818	0.998635	113892452956	721101585	107503208740	105666060259	0.000000	0.004136	0.003508	0.000236	150.000000	766873626	0.998725	0	0.500916	0.007390	0.000000