#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG03995/HG03995.cram --algo AlignmentStat 1000G/HG03995/QCmetrics/HG03995.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	468420038	468420038	1.000000	0	468285147	0.999712	69662749330	442296559	65996836469	64864347369	0.000000	0.004228	0.003717	0.000227	150.000000	467079858	0.997426	0	0.500607	0.007356	0.000000	
SECOND_OF_PAIR	468420038	468420038	1.000000	0	467143472	0.997275	69064100061	438296504	65224743703	63986403589	0.000000	0.004574	0.003979	0.000233	150.000000	467079858	0.999864	0	0.500770	0.007899	0.000000	
PAIR	936840076	936840076	1.000000	0	935428619	0.998493	138726849391	880593063	131221580172	128850750958	0.000000	0.004401	0.003847	0.000230	150.000000	934159716	0.998644	0	0.500689	0.007627	0.000000