#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04002/HG04002.cram --algo AlignmentStat 1000G/HG04002/QCmetrics/HG04002.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	391270504	391270504	1.000000	0	391142600	0.999673	58122711771	366762563	54703884184	53724120173	0.000000	0.004552	0.003899	0.000245	150.000000	390020030	0.997130	0	0.500579	0.008416	0.000000	
SECOND_OF_PAIR	391270504	391270504	1.000000	0	390073410	0.996940	57599532846	363568189	54055996440	52776968855	0.000000	0.005455	0.004718	0.000250	150.000000	390020030	0.999863	0	0.500893	0.008925	0.000000	
PAIR	782541008	782541008	1.000000	0	781216010	0.998307	115722244617	730330752	108759880624	106501089028	0.000000	0.005001	0.004306	0.000248	150.000000	780040060	0.998495	0	0.500736	0.008670	0.000000