#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04017/HG04017.cram --algo AlignmentStat 1000G/HG04017/QCmetrics/HG04017.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	410551002	410551002	1.000000	0	410440401	0.999731	61012722741	384872899	57419721418	56447427671	0.000000	0.004478	0.003812	0.000238	150.000000	409572875	0.997886	0	0.500521	0.006691	0.000000	
SECOND_OF_PAIR	410551002	410551002	1.000000	0	409627234	0.997750	60586723788	382308648	56895933984	55831076932	0.000000	0.004797	0.004068	0.000242	150.000000	409572875	0.999867	0	0.500373	0.007136	0.000000	
PAIR	821102004	821102004	1.000000	0	820067635	0.998740	121599446529	767181547	114315655402	112278504603	0.000000	0.004637	0.003939	0.000240	150.000000	819145750	0.998876	0	0.500447	0.006913	0.000000