#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04022/HG04022.cram --algo AlignmentStat 1000G/HG04022/QCmetrics/HG04022.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	386761829	386761829	1.000000	0	386649420	0.999709	57473145441	362660443	54104801455	53142625831	0.000000	0.004551	0.003869	0.000237	150.000000	385455094	0.996911	0	0.500485	0.007214	0.000001	
SECOND_OF_PAIR	386761829	386761829	1.000000	0	385506800	0.996755	56930218930	359061583	53407577774	52150354621	0.000000	0.005500	0.004720	0.000243	150.000000	385455094	0.999866	0	0.501254	0.007675	0.000000	
PAIR	773523658	773523658	1.000000	0	772156220	0.998232	114403364371	721722026	107512379229	105292980452	0.000000	0.005023	0.004291	0.000240	150.000000	770910188	0.998386	0	0.500869	0.007445	0.000000