#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04023/HG04023.cram --algo AlignmentStat 1000G/HG04023/QCmetrics/HG04023.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	394604906	394604906	1.000000	0	394427000	0.999549	58513623184	369452463	55036628171	53522131211	0.000000	0.005806	0.005109	0.000236	150.000000	393282658	0.997099	0	0.500499	0.007525	0.000000	
SECOND_OF_PAIR	394604906	394604906	1.000000	0	393367595	0.996864	58135891752	366138319	54517914565	53109616149	0.000000	0.005572	0.004794	0.000243	150.000000	393282658	0.999784	0	0.500765	0.007713	0.000000	
PAIR	789209812	789209812	1.000000	0	787794595	0.998207	116649514936	735590782	109554542736	106631747360	0.000000	0.005690	0.004952	0.000240	150.000000	786565316	0.998440	0	0.500631	0.007619	0.000000