#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04038/HG04038.cram --algo AlignmentStat 1000G/HG04038/QCmetrics/HG04038.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	366333784	366333784	1.000000	0	366234357	0.999729	54476051135	344887349	51462586950	50554369210	0.000000	0.004278	0.003750	0.000227	150.000000	365287459	0.997415	0	0.500541	0.006989	0.000000	
SECOND_OF_PAIR	366333784	366333784	1.000000	0	365336930	0.997279	54020787961	341702635	50864703923	49887125784	0.000000	0.004590	0.003972	0.000234	150.000000	365287459	0.999865	0	0.500876	0.007504	0.000000	
PAIR	732667568	732667568	1.000000	0	731571287	0.998504	108496839096	686589984	102327290873	100441494994	0.000000	0.004434	0.003860	0.000230	150.000000	730574918	0.998638	0	0.500708	0.007246	0.000000