#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04039/HG04039.cram --algo AlignmentStat 1000G/HG04039/QCmetrics/HG04039.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	441058242	441058242	1.000000	0	440816124	0.999451	65426190681	413522438	61604654682	60406354931	0.000000	0.004829	0.004151	0.000230	150.000000	439565242	0.997162	0	0.500482	0.007000	0.000000	
SECOND_OF_PAIR	441058242	441058242	1.000000	0	439666756	0.996845	65076501153	409707428	61068860751	59857574520	0.000000	0.004821	0.004054	0.000239	150.000000	439565242	0.999769	0	0.500910	0.007123	0.000000	
PAIR	882116484	882116484	1.000000	0	880482880	0.998148	130502691834	823229866	122673515433	120263929451	0.000000	0.004825	0.004102	0.000234	150.000000	879130484	0.998464	0	0.500695	0.007061	0.000000