#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04042/HG04042.cram --algo AlignmentStat 1000G/HG04042/QCmetrics/HG04042.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	389949209	389949209	1.000000	0	389820306	0.999669	57985496675	368238184	54946403307	53985958614	0.000000	0.004318	0.003784	0.000229	150.000000	388763158	0.997288	0	0.500484	0.006874	0.000000	
SECOND_OF_PAIR	389949209	389949209	1.000000	0	388819325	0.997102	57482515756	364805966	54291775621	53211359710	0.000000	0.004760	0.004137	0.000235	150.000000	388763158	0.999856	0	0.501049	0.007353	0.000000	
PAIR	779898418	779898418	1.000000	0	778639631	0.998386	115468012431	733044150	109238178928	107197318324	0.000000	0.004538	0.003960	0.000232	150.000000	777526316	0.998570	0	0.500766	0.007113	0.000000