#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04059/HG04059.cram --algo AlignmentStat 1000G/HG04059/QCmetrics/HG04059.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	379199734	379199734	1.000000	0	379043936	0.999589	56320269712	358050718	53385519663	52253169632	0.000000	0.004589	0.004056	0.000227	150.000000	377914750	0.997021	0	0.500515	0.006889	0.000000	
SECOND_OF_PAIR	379199734	379199734	1.000000	0	377982758	0.996791	55891543027	354084597	52758989145	51616492894	0.000000	0.004736	0.004092	0.000235	150.000000	377914750	0.999820	0	0.501361	0.007113	0.000000	
PAIR	758399468	758399468	1.000000	0	757026694	0.998190	112211812739	712135315	106144508808	103869662526	0.000000	0.004662	0.004074	0.000231	150.000000	755829500	0.998419	0	0.500937	0.007001	0.000000