#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04070/HG04070.cram --algo AlignmentStat 1000G/HG04070/QCmetrics/HG04070.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	373293803	373293803	1.000000	0	373140353	0.999589	55408012610	352248363	52494572274	51141107263	0.000000	0.005275	0.004738	0.000225	150.000000	372020989	0.997000	0	0.500577	0.006215	0.000000	
SECOND_OF_PAIR	373293803	373293803	1.000000	0	372096709	0.996793	55022250714	348698880	51939829886	50653402510	0.000000	0.005170	0.004533	0.000233	150.000000	372020989	0.999797	0	0.501130	0.006373	0.000000	
PAIR	746587606	746587606	1.000000	0	745237062	0.998191	110430263324	700947243	104434402160	101794509773	0.000000	0.005223	0.004636	0.000229	150.000000	744041978	0.998396	0	0.500853	0.006294	0.000000