#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04076/HG04076.cram --algo AlignmentStat 1000G/HG04076/QCmetrics/HG04076.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385674470	385674470	1.000000	0	385502480	0.999554	57337871251	364933414	54450222539	53464297363	0.000000	0.004363	0.003841	0.000230	150.000000	384339319	0.996983	0	0.500502	0.007197	0.000000	
SECOND_OF_PAIR	385674470	385674470	1.000000	0	384402787	0.996703	56803229122	361309059	53760714404	52610876510	0.000000	0.004922	0.004309	0.000237	150.000000	384339319	0.999835	0	0.501071	0.007703	0.000000	
PAIR	771348940	771348940	1.000000	0	769905267	0.998128	114141100373	726242473	108210936943	106075173873	0.000000	0.004642	0.004074	0.000234	150.000000	768678638	0.998407	0	0.500786	0.007450	0.000000