#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04098/HG04098.cram --algo AlignmentStat 1000G/HG04098/QCmetrics/HG04098.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387132334	387132334	1.000000	0	386977040	0.999599	57476116851	362856758	54094421861	52905117674	0.000000	0.004726	0.004074	0.000227	150.000000	385889746	0.997190	0	0.500573	0.007860	0.000000	
SECOND_OF_PAIR	387132334	387132334	1.000000	0	385959483	0.996970	57081634488	359529794	53549515344	52215811202	0.000000	0.005226	0.004481	0.000233	150.000000	385889746	0.999819	0	0.501010	0.008134	0.000000	
PAIR	774264668	774264668	1.000000	0	772936523	0.998285	114557751339	722386552	107643937205	105120928876	0.000000	0.004975	0.004276	0.000230	150.000000	771779492	0.998503	0	0.500791	0.007997	0.000000