#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04131/HG04131.cram --algo AlignmentStat 1000G/HG04131/QCmetrics/HG04131.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	414132876	414132876	1.000000	0	413925975	0.999500	61419845723	388802264	57921107953	56310939569	0.000000	0.005715	0.005051	0.000233	150.000000	412366725	0.996233	0	0.500553	0.007414	0.000000	
SECOND_OF_PAIR	414132876	414132876	1.000000	0	412456714	0.995953	60890977516	384093963	57170603209	55507552148	0.000000	0.005980	0.005201	0.000242	150.000000	412366725	0.999782	0	0.501606	0.007617	0.000000	
PAIR	828265752	828265752	1.000000	0	826382689	0.997726	122310823239	772896227	115091711162	111818491717	0.000000	0.005847	0.005125	0.000237	150.000000	824733450	0.998004	0	0.501078	0.007515	0.000000