#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04146/HG04146.cram --algo AlignmentStat 1000G/HG04146/QCmetrics/HG04146.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	367559195	367559195	1.000000	0	367437270	0.999668	54601137934	344668973	51417882266	50527169375	0.000000	0.004526	0.003831	0.000242	150.000000	366493764	0.997432	0	0.500475	0.007348	0.000000	
SECOND_OF_PAIR	367559195	367559195	1.000000	0	366547078	0.997246	54152936049	341805297	50852829695	49811906041	0.000000	0.005050	0.004278	0.000248	150.000000	366493764	0.999855	0	0.500846	0.007849	0.000000	
PAIR	735118390	735118390	1.000000	0	733984348	0.998457	108754073983	686474270	102270711961	100339075416	0.000000	0.004787	0.004053	0.000245	150.000000	732987528	0.998642	0	0.500660	0.007598	0.000000