#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04161/HG04161.cram --algo AlignmentStat 1000G/HG04161/QCmetrics/HG04161.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	385000261	385000261	1.000000	0	384851195	0.999613	57145908608	361831171	53933137966	52795089509	0.000000	0.004716	0.004085	0.000230	150.000000	383792401	0.997249	0	0.500541	0.008173	0.000000	
SECOND_OF_PAIR	385000261	385000261	1.000000	0	383861797	0.997043	56758739060	358463940	53390637248	52182839277	0.000000	0.004997	0.004271	0.000237	150.000000	383792401	0.999819	0	0.501005	0.008497	0.000000	
PAIR	770000522	770000522	1.000000	0	768712992	0.998328	113904647668	720295111	107323775214	104977928786	0.000000	0.004856	0.004178	0.000233	150.000000	767584802	0.998532	0	0.500773	0.008335	0.000000