#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04162/HG04162.cram --algo AlignmentStat 1000G/HG04162/QCmetrics/HG04162.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	352955604	352955604	1.000000	0	352815415	0.999603	52394202618	332387629	49543687330	48324922768	0.000000	0.005051	0.004483	0.000229	150.000000	351585597	0.996514	0	0.500556	0.006220	0.000000	
SECOND_OF_PAIR	352955604	352955604	1.000000	0	351646403	0.996291	51967694881	329084928	48978953562	47474482844	0.000000	0.006001	0.005338	0.000234	150.000000	351585597	0.999827	0	0.501301	0.006364	0.000000	
PAIR	705911208	705911208	1.000000	0	704461818	0.997947	104361897499	661472557	98522640892	95799405612	0.000000	0.005524	0.004908	0.000231	150.000000	703171194	0.998168	0	0.500928	0.006292	0.000000