#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04173/HG04173.cram --algo AlignmentStat 1000G/HG04173/QCmetrics/HG04173.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	387553732	387553732	1.000000	0	387420399	0.999656	57503926379	363701616	54212343800	53086976349	0.000000	0.004779	0.004088	0.000238	150.000000	386272378	0.997037	0	0.500568	0.007603	0.000000	
SECOND_OF_PAIR	387553732	387553732	1.000000	0	386337262	0.996861	57079698340	360133628	53628651167	52362257790	0.000000	0.005233	0.004449	0.000245	150.000000	386272378	0.999832	0	0.501102	0.007856	0.000000	
PAIR	775107464	775107464	1.000000	0	773757661	0.998259	114583624719	723835244	107840994967	105449234139	0.000000	0.005005	0.004268	0.000242	150.000000	772544756	0.998432	0	0.500835	0.007729	0.000000