#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04177/HG04177.cram --algo AlignmentStat 1000G/HG04177/QCmetrics/HG04177.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	392855793	392855793	1.000000	0	392719201	0.999652	58354094445	369939856	55156184443	53999099675	0.000000	0.004645	0.004092	0.000226	150.000000	391588996	0.997122	0	0.500518	0.007021	0.000000	
SECOND_OF_PAIR	392855793	392855793	1.000000	0	391654735	0.996943	57940501014	366387754	54577787793	53299656883	0.000000	0.005034	0.004381	0.000233	150.000000	391588996	0.999832	0	0.501206	0.007275	0.000000	
PAIR	785711586	785711586	1.000000	0	784373936	0.998298	116294595459	736327610	109733972236	107298756558	0.000000	0.004839	0.004236	0.000229	150.000000	783177992	0.998475	0	0.500862	0.007148	0.000000