#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04182/HG04182.cram --algo AlignmentStat 1000G/HG04182/QCmetrics/HG04182.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	371967131	371967131	1.000000	0	371830962	0.999634	55210350529	347956207	51868417946	50776272782	0.000000	0.004796	0.004121	0.000233	150.000000	370703170	0.996967	0	0.500647	0.007587	0.000000	
SECOND_OF_PAIR	371967131	371967131	1.000000	0	370766605	0.996772	54801974259	344576562	51310191677	50024278738	0.000000	0.005420	0.004648	0.000239	150.000000	370703170	0.999829	0	0.501069	0.007819	0.000000	
PAIR	743934262	743934262	1.000000	0	742597567	0.998203	110012324788	692532769	103178609623	100800551520	0.000000	0.005107	0.004383	0.000236	150.000000	741406340	0.998396	0	0.500857	0.007703	0.000000