#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04183/HG04183.cram --algo AlignmentStat 1000G/HG04183/QCmetrics/HG04183.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	504888181	504888181	1.000000	0	504729647	0.999686	74967832074	476109456	70980248590	69510436978	0.000000	0.004582	0.004008	0.000231	150.000000	503224808	0.997019	0	0.500619	0.007542	0.000000	
SECOND_OF_PAIR	504888181	504888181	1.000000	0	503302672	0.996860	74414934812	471409689	70205932516	68492510582	0.000000	0.005174	0.004500	0.000237	150.000000	503224808	0.999845	0	0.501243	0.007779	0.000000	
PAIR	1009776362	1009776362	1.000000	0	1008032319	0.998273	149382766886	947519145	141186181106	138002947560	0.000000	0.004877	0.004253	0.000234	150.000000	1006449616	0.998430	0	0.500930	0.007660	0.000000