#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04206/HG04206.cram --algo AlignmentStat 1000G/HG04206/QCmetrics/HG04206.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	428122499	428122499	1.000000	0	427990102	0.999691	63544142722	402043932	59930997253	58701739730	0.000000	0.004715	0.004043	0.000231	150.000000	426762294	0.997131	0	0.500489	0.007151	0.000000	
SECOND_OF_PAIR	428122499	428122499	1.000000	0	426832008	0.996986	63091679886	397982808	59283038871	57984426037	0.000000	0.004975	0.004197	0.000238	150.000000	426762294	0.999837	0	0.501249	0.007361	0.000000	
PAIR	856244998	856244998	1.000000	0	854822110	0.998338	126635822608	800026740	119214036124	116686165767	0.000000	0.004845	0.004119	0.000234	150.000000	853524588	0.998482	0	0.500869	0.007256	0.000000