#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04211/HG04211.cram --algo AlignmentStat 1000G/HG04211/QCmetrics/HG04211.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	355974031	355974031	1.000000	0	355804243	0.999523	52826735126	333935223	49777861962	48721000593	0.000000	0.004766	0.004105	0.000231	150.000000	354827126	0.997254	0	0.500578	0.006551	0.000000	
SECOND_OF_PAIR	355974031	355974031	1.000000	0	354897383	0.996975	52468893726	330726102	49267337390	48178496955	0.000000	0.004940	0.004180	0.000238	150.000000	354827126	0.999802	0	0.500995	0.006739	0.000000	
PAIR	711948062	711948062	1.000000	0	710701626	0.998249	105295628852	664661325	99045199352	96899497548	0.000000	0.004853	0.004142	0.000234	150.000000	709654252	0.998526	0	0.500786	0.006645	0.000000