#SentieonCommandLine: /lustre8/home/ykawai-tnproj-pg/packages/sentieon-genomics-201911/libexec/driver -t 8 -r /lustre8/home/ncbn-pg/data/resource/Homo_sapiens_assembly38.fasta -i 1000G/HG04227/HG04227.cram --algo AlignmentStat 1000G/HG04227/QCmetrics/HG04227.AlignmentStat.txt
CATEGORY	TOTAL_READS	PF_READS	PCT_PF_READS	PF_NOISE_READS	PF_READS_ALIGNED	PCT_PF_READS_ALIGNED	PF_ALIGNED_BASES	PF_HQ_ALIGNED_READS	PF_HQ_ALIGNED_BASES	PF_HQ_ALIGNED_Q20_BASES	PF_HQ_MEDIAN_MISMATCHES	PF_MISMATCH_RATE	PF_HQ_ERROR_RATE	PF_INDEL_RATE	MEAN_READ_LENGTH	READS_ALIGNED_IN_PAIRS	PCT_READS_ALIGNED_IN_PAIRS	BAD_CYCLES	STRAND_BALANCE	PCT_CHIMERAS	PCT_ADAPTER	
FIRST_OF_PAIR	393367783	393367783	1.000000	0	393199791	0.999573	58399333342	371363007	55346795680	54020060375	0.000000	0.004918	0.004395	0.000221	150.000000	391947908	0.996816	0	0.500629	0.006266	0.000000	
SECOND_OF_PAIR	393367783	393367783	1.000000	0	392024243	0.996585	57975737298	367466915	54737120917	53349122892	0.000000	0.005168	0.004540	0.000230	150.000000	391947908	0.999805	0	0.501204	0.006418	0.000000	
PAIR	786735566	786735566	1.000000	0	785224034	0.998079	116375070640	738829922	110083916597	107369183267	0.000000	0.005043	0.004467	0.000226	150.000000	783895816	0.998308	0	0.500916	0.006342	0.000000